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Table 2 Online databases focused on circRNAs in cancer

From: The crosstalk between alternative splicing and circular RNA in cancer: pathogenic insights and therapeutic implications

Database

Main contents

URL

Reference

circExp

circRNA expression profile human cancers curated across 11 technical platforms

http://soft.bioinfominzhao.org/circexp/

[247]

CircNet 2.0

Integrative circRNA profile in human cancer exhibiting gene-circRNA-miRNA interaction network

https://awi.cuhk.edu.cn/CircNet

[248]

circMine

Disease specific circRNA database with online analytical and visualization function

http://hpcc.siat.ac.cn/circmine

[214]

CircR2Cancer

Manually curated and experimentally supported associations between circRNAs and cancers

http://www.biobdlab.cn:8000/

[249]

CRMarker

Manually curated repository of cancer circRNA markers with diagnostic and prognostic information

http://crmarker.hnnu.edu.cn/

[250]

CSCD2

Integrated interactional database of circRNA in human cancer with predicted miRNA-circRNA and RBP-circRNA interactions

http://geneyun.net/CSCD2

[215]

Lnc2Cancer 3.0

Experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data

http://www.bio-bigdata.net/lnc2cancer

[251]

SCancerRNA

High confident experimentally supported circRNA-disease associations

http://www.scancerrna.com/BioMarker

[216]

SomamiR 2.0

Cancer somatic mutations altering microRNA-ceRNA interactions

http://compbio.uthsc.edu/SomamiR

[213]

MiOncoCirc

The first database to be composed primarily of circRNAs directly detected in tumor tissues

https://mioncocirc.github.io/

[9]

ncRNADrug

Validated and predicted ncRNAs associated with drug resistance and targeted by drugs

http://www.jianglab.cn/ncRNADrug

[212]